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mirror of https://github.com/taigrr/bitcask synced 2025-01-18 04:03:17 -08:00

Add all files again with v2 postfix to URL

This commit is contained in:
2022-02-01 19:06:30 -08:00
parent d23c355e72
commit 60aaf19d15
31 changed files with 6120 additions and 0 deletions

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package config
import (
"encoding/json"
"io/ioutil"
"os"
)
// Config contains the bitcask configuration parameters
type Config struct {
MaxDatafileSize int `json:"max_datafile_size"`
MaxKeySize uint32 `json:"max_key_size"`
MaxValueSize uint64 `json:"max_value_size"`
Sync bool `json:"sync"`
AutoRecovery bool `json:"autorecovery"`
DBVersion uint32 `json:"db_version"`
DirFileModeBeforeUmask os.FileMode
FileFileModeBeforeUmask os.FileMode
}
// Load loads a configuration from the given path
func Load(path string) (*Config, error) {
var cfg Config
data, err := ioutil.ReadFile(path)
if err != nil {
return nil, err
}
if err := json.Unmarshal(data, &cfg); err != nil {
return nil, err
}
return &cfg, nil
}
// Save saves the configuration to the provided path
func (c *Config) Save(path string) error {
data, err := json.Marshal(c)
if err != nil {
return err
}
err = ioutil.WriteFile(path, data, c.FileFileModeBeforeUmask)
if err != nil {
return err
}
return nil
}

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package codec
import (
"encoding/binary"
"io"
"time"
"git.mills.io/prologic/bitcask/v2/internal"
"github.com/pkg/errors"
)
var (
errInvalidKeyOrValueSize = errors.New("key/value size is invalid")
errCantDecodeOnNilEntry = errors.New("can't decode on nil entry")
errTruncatedData = errors.New("data is truncated")
)
// NewDecoder creates a streaming Entry decoder.
func NewDecoder(r io.Reader, maxKeySize uint32, maxValueSize uint64) *Decoder {
return &Decoder{
r: r,
maxKeySize: maxKeySize,
maxValueSize: maxValueSize,
}
}
// Decoder wraps an underlying io.Reader and allows you to stream
// Entry decodings on it.
type Decoder struct {
r io.Reader
maxKeySize uint32
maxValueSize uint64
}
// Decode decodes the next Entry from the current stream
func (d *Decoder) Decode(v *internal.Entry) (int64, error) {
if v == nil {
return 0, errCantDecodeOnNilEntry
}
prefixBuf := make([]byte, keySize+valueSize)
_, err := io.ReadFull(d.r, prefixBuf)
if err != nil {
return 0, err
}
actualKeySize, actualValueSize, err := getKeyValueSizes(prefixBuf, d.maxKeySize, d.maxValueSize)
if err != nil {
return 0, err
}
buf := make([]byte, uint64(actualKeySize)+actualValueSize+checksumSize+ttlSize)
if _, err = io.ReadFull(d.r, buf); err != nil {
return 0, errTruncatedData
}
decodeWithoutPrefix(buf, actualKeySize, v)
return int64(keySize + valueSize + uint64(actualKeySize) + actualValueSize + checksumSize + ttlSize), nil
}
// DecodeEntry decodes a serialized entry
func DecodeEntry(b []byte, e *internal.Entry, maxKeySize uint32, maxValueSize uint64) error {
valueOffset, _, err := getKeyValueSizes(b, maxKeySize, maxValueSize)
if err != nil {
return errors.Wrap(err, "key/value sizes are invalid")
}
decodeWithoutPrefix(b[keySize+valueSize:], valueOffset, e)
return nil
}
func getKeyValueSizes(buf []byte, maxKeySize uint32, maxValueSize uint64) (uint32, uint64, error) {
actualKeySize := binary.BigEndian.Uint32(buf[:keySize])
actualValueSize := binary.BigEndian.Uint64(buf[keySize:])
if (maxKeySize > 0 && actualKeySize > maxKeySize) || (maxValueSize > 0 && actualValueSize > maxValueSize) || actualKeySize == 0 {
return 0, 0, errInvalidKeyOrValueSize
}
return actualKeySize, actualValueSize, nil
}
func decodeWithoutPrefix(buf []byte, valueOffset uint32, v *internal.Entry) {
v.Key = buf[:valueOffset]
v.Value = buf[valueOffset : len(buf)-checksumSize-ttlSize]
v.Checksum = binary.BigEndian.Uint32(buf[len(buf)-checksumSize-ttlSize : len(buf)-ttlSize])
v.Expiry = getKeyExpiry(buf)
}
func getKeyExpiry(buf []byte) *time.Time {
expiry := binary.BigEndian.Uint64(buf[len(buf)-ttlSize:])
if expiry == uint64(0) {
return nil
}
t := time.Unix(int64(expiry), 0).UTC()
return &t
}
// IsCorruptedData indicates if the error correspondes to possible data corruption
func IsCorruptedData(err error) bool {
switch err {
case errCantDecodeOnNilEntry, errInvalidKeyOrValueSize, errTruncatedData:
return true
default:
return false
}
}

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package codec
import (
"bytes"
"encoding/binary"
"io"
"testing"
"time"
"git.mills.io/prologic/bitcask/v2/internal"
"github.com/stretchr/testify/assert"
)
func TestDecodeOnNilEntry(t *testing.T) {
t.Parallel()
assert := assert.New(t)
decoder := NewDecoder(&bytes.Buffer{}, 1, 1)
_, err := decoder.Decode(nil)
if assert.Error(err) {
assert.Equal(errCantDecodeOnNilEntry, err)
}
}
func TestShortPrefix(t *testing.T) {
t.Parallel()
assert := assert.New(t)
maxKeySize, maxValueSize := uint32(10), uint64(20)
prefix := make([]byte, keySize+valueSize)
binary.BigEndian.PutUint32(prefix, 1)
binary.BigEndian.PutUint64(prefix[keySize:], 1)
truncBytesCount := 2
buf := bytes.NewBuffer(prefix[:keySize+valueSize-truncBytesCount])
decoder := NewDecoder(buf, maxKeySize, maxValueSize)
_, err := decoder.Decode(&internal.Entry{})
if assert.Error(err) {
assert.Equal(io.ErrUnexpectedEOF, err)
}
}
func TestInvalidValueKeySizes(t *testing.T) {
assert := assert.New(t)
maxKeySize, maxValueSize := uint32(10), uint64(20)
tests := []struct {
keySize uint32
valueSize uint64
name string
}{
{keySize: 0, valueSize: 5, name: "zero key size"}, //zero value size is correct for tombstones
{keySize: 11, valueSize: 5, name: "key size overflow"},
{keySize: 5, valueSize: 21, name: "value size overflow"},
{keySize: 11, valueSize: 21, name: "key and value size overflow"},
}
for i := range tests {
i := i
t.Run(tests[i].name, func(t *testing.T) {
t.Parallel()
prefix := make([]byte, keySize+valueSize)
binary.BigEndian.PutUint32(prefix, tests[i].keySize)
binary.BigEndian.PutUint64(prefix[keySize:], tests[i].valueSize)
buf := bytes.NewBuffer(prefix)
decoder := NewDecoder(buf, maxKeySize, maxValueSize)
_, err := decoder.Decode(&internal.Entry{})
if assert.Error(err) {
assert.Equal(errInvalidKeyOrValueSize, err)
}
})
}
}
func TestTruncatedData(t *testing.T) {
assert := assert.New(t)
maxKeySize, maxValueSize := uint32(10), uint64(20)
key := []byte("foo")
value := []byte("bar")
data := make([]byte, keySize+valueSize+len(key)+len(value)+checksumSize)
binary.BigEndian.PutUint32(data, uint32(len(key)))
binary.BigEndian.PutUint64(data[keySize:], uint64(len(value)))
copy(data[keySize+valueSize:], key)
copy(data[keySize+valueSize+len(key):], value)
copy(data[keySize+valueSize+len(key)+len(value):], bytes.Repeat([]byte("0"), checksumSize))
tests := []struct {
data []byte
name string
}{
{data: data[:keySize+valueSize+len(key)-1], name: "truncated key"},
{data: data[:keySize+valueSize+len(key)+len(value)-1], name: "truncated value"},
{data: data[:keySize+valueSize+len(key)+len(value)+checksumSize-1], name: "truncated checksum"},
}
for i := range tests {
i := i
t.Run(tests[i].name, func(t *testing.T) {
t.Parallel()
buf := bytes.NewBuffer(tests[i].data)
decoder := NewDecoder(buf, maxKeySize, maxValueSize)
_, err := decoder.Decode(&internal.Entry{})
if assert.Error(err) {
assert.Equal(errTruncatedData, err)
}
})
}
}
func TestDecodeWithoutPrefix(t *testing.T) {
assert := assert.New(t)
e := internal.Entry{}
buf := []byte{0, 0, 0, 5, 0, 0, 0, 0, 0, 0, 0, 7, 109, 121, 107, 101, 121, 109, 121, 118, 97, 108, 117, 101, 0, 6, 81, 189, 0, 0, 0, 0, 95, 117, 28, 0}
valueOffset := uint32(5)
mockTime := time.Date(2020, 10, 1, 0, 0, 0, 0, time.UTC)
expectedEntry := internal.Entry{
Key: []byte("mykey"),
Value: []byte("myvalue"),
Checksum: 414141,
Expiry: &mockTime,
}
decodeWithoutPrefix(buf[keySize+valueSize:], valueOffset, &e)
assert.Equal(expectedEntry.Key, e.Key)
assert.Equal(expectedEntry.Value, e.Value)
assert.Equal(expectedEntry.Checksum, e.Checksum)
assert.Equal(expectedEntry.Offset, e.Offset)
assert.Equal(*expectedEntry.Expiry, *e.Expiry)
}

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package codec
import (
"bufio"
"encoding/binary"
"io"
"git.mills.io/prologic/bitcask/v2/internal"
"github.com/pkg/errors"
)
const (
keySize = 4
valueSize = 8
checksumSize = 4
ttlSize = 8
MetaInfoSize = keySize + valueSize + checksumSize + ttlSize
)
// NewEncoder creates a streaming Entry encoder.
func NewEncoder(w io.Writer) *Encoder {
return &Encoder{w: bufio.NewWriter(w)}
}
// Encoder wraps an underlying io.Writer and allows you to stream
// Entry encodings on it.
type Encoder struct {
w *bufio.Writer
}
// Encode takes any Entry and streams it to the underlying writer.
// Messages are framed with a key-length and value-length prefix.
func (e *Encoder) Encode(msg internal.Entry) (int64, error) {
var bufKeyValue = make([]byte, keySize+valueSize)
binary.BigEndian.PutUint32(bufKeyValue[:keySize], uint32(len(msg.Key)))
binary.BigEndian.PutUint64(bufKeyValue[keySize:keySize+valueSize], uint64(len(msg.Value)))
if _, err := e.w.Write(bufKeyValue); err != nil {
return 0, errors.Wrap(err, "failed writing key & value length prefix")
}
if _, err := e.w.Write(msg.Key); err != nil {
return 0, errors.Wrap(err, "failed writing key data")
}
if _, err := e.w.Write(msg.Value); err != nil {
return 0, errors.Wrap(err, "failed writing value data")
}
bufChecksumSize := bufKeyValue[:checksumSize]
binary.BigEndian.PutUint32(bufChecksumSize, msg.Checksum)
if _, err := e.w.Write(bufChecksumSize); err != nil {
return 0, errors.Wrap(err, "failed writing checksum data")
}
bufTTL := bufKeyValue[:ttlSize]
if msg.Expiry == nil {
binary.BigEndian.PutUint64(bufTTL, uint64(0))
} else {
binary.BigEndian.PutUint64(bufTTL, uint64(msg.Expiry.Unix()))
}
if _, err := e.w.Write(bufTTL); err != nil {
return 0, errors.Wrap(err, "failed writing ttl data")
}
if err := e.w.Flush(); err != nil {
return 0, errors.Wrap(err, "failed flushing data")
}
return int64(keySize + valueSize + len(msg.Key) + len(msg.Value) + checksumSize + ttlSize), nil
}

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package codec
import (
"bytes"
"encoding/hex"
"testing"
"time"
"git.mills.io/prologic/bitcask/v2/internal"
"github.com/stretchr/testify/assert"
)
func TestEncode(t *testing.T) {
t.Parallel()
assert := assert.New(t)
var buf bytes.Buffer
mockTime := time.Date(2020, 10, 1, 0, 0, 0, 0, time.UTC)
encoder := NewEncoder(&buf)
_, err := encoder.Encode(internal.Entry{
Key: []byte("mykey"),
Value: []byte("myvalue"),
Checksum: 414141,
Offset: 424242,
Expiry: &mockTime,
})
expectedHex := "0000000500000000000000076d796b65796d7976616c7565000651bd000000005f751c00"
if assert.NoError(err) {
assert.Equal(expectedHex, hex.EncodeToString(buf.Bytes()))
}
}

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package data
import (
"fmt"
"os"
"path/filepath"
"sync"
"git.mills.io/prologic/bitcask/v2/internal"
"git.mills.io/prologic/bitcask/v2/internal/data/codec"
"github.com/pkg/errors"
"golang.org/x/exp/mmap"
)
const (
defaultDatafileFilename = "%09d.data"
)
var (
errReadonly = errors.New("error: read only datafile")
errReadError = errors.New("error: read error")
)
// Datafile is an interface that represents a readable and writeable datafile
type Datafile interface {
FileID() int
Name() string
Close() error
Sync() error
Size() int64
Read() (internal.Entry, int64, error)
ReadAt(index, size int64) (internal.Entry, error)
Write(internal.Entry) (int64, int64, error)
}
type datafile struct {
sync.RWMutex
id int
r *os.File
ra *mmap.ReaderAt
w *os.File
offset int64
dec *codec.Decoder
enc *codec.Encoder
maxKeySize uint32
maxValueSize uint64
}
// NewDatafile opens an existing datafile
func NewDatafile(path string, id int, readonly bool, maxKeySize uint32, maxValueSize uint64, fileMode os.FileMode) (Datafile, error) {
var (
r *os.File
ra *mmap.ReaderAt
w *os.File
err error
)
fn := filepath.Join(path, fmt.Sprintf(defaultDatafileFilename, id))
if !readonly {
w, err = os.OpenFile(fn, os.O_WRONLY|os.O_APPEND|os.O_CREATE, fileMode)
if err != nil {
return nil, err
}
}
r, err = os.Open(fn)
if err != nil {
return nil, err
}
stat, err := r.Stat()
if err != nil {
return nil, errors.Wrap(err, "error calling Stat()")
}
if readonly {
ra, err = mmap.Open(fn)
if err != nil {
return nil, err
}
}
offset := stat.Size()
dec := codec.NewDecoder(r, maxKeySize, maxValueSize)
enc := codec.NewEncoder(w)
return &datafile{
id: id,
r: r,
ra: ra,
w: w,
offset: offset,
dec: dec,
enc: enc,
maxKeySize: maxKeySize,
maxValueSize: maxValueSize,
}, nil
}
func (df *datafile) FileID() int {
return df.id
}
func (df *datafile) Name() string {
return df.r.Name()
}
func (df *datafile) Close() error {
defer func() {
if df.ra != nil {
df.ra.Close()
}
df.r.Close()
}()
// Readonly datafile -- Nothing further to close on the write side
if df.w == nil {
return nil
}
err := df.Sync()
if err != nil {
return err
}
return df.w.Close()
}
func (df *datafile) Sync() error {
if df.w == nil {
return nil
}
return df.w.Sync()
}
func (df *datafile) Size() int64 {
df.RLock()
defer df.RUnlock()
return df.offset
}
// Read reads the next entry from the datafile
func (df *datafile) Read() (e internal.Entry, n int64, err error) {
df.Lock()
defer df.Unlock()
n, err = df.dec.Decode(&e)
if err != nil {
return
}
return
}
// ReadAt the entry located at index offset with expected serialized size
func (df *datafile) ReadAt(index, size int64) (e internal.Entry, err error) {
var n int
b := make([]byte, size)
df.RLock()
defer df.RUnlock()
if df.ra != nil {
n, err = df.ra.ReadAt(b, index)
} else {
n, err = df.r.ReadAt(b, index)
}
if err != nil {
return
}
if int64(n) != size {
err = errReadError
return
}
codec.DecodeEntry(b, &e, df.maxKeySize, df.maxValueSize)
return
}
func (df *datafile) Write(e internal.Entry) (int64, int64, error) {
if df.w == nil {
return -1, 0, errReadonly
}
df.Lock()
defer df.Unlock()
e.Offset = df.offset
n, err := df.enc.Encode(e)
if err != nil {
return -1, 0, err
}
df.offset += n
return e.Offset, n, nil
}

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package data
import (
"fmt"
"io"
"os"
"path/filepath"
"git.mills.io/prologic/bitcask/v2/internal"
"git.mills.io/prologic/bitcask/v2/internal/config"
"git.mills.io/prologic/bitcask/v2/internal/data/codec"
)
// CheckAndRecover checks and recovers the last datafile.
// If the datafile isn't corrupted, this is a noop. If it is,
// the longest non-corrupted prefix will be kept and the rest
// will be *deleted*. Also, the index file is also *deleted* which
// will be automatically recreated on next startup.
func CheckAndRecover(path string, cfg *config.Config) error {
dfs, err := internal.GetDatafiles(path)
if err != nil {
return fmt.Errorf("scanning datafiles: %s", err)
}
if len(dfs) == 0 {
return nil
}
f := dfs[len(dfs)-1]
recovered, err := recoverDatafile(f, cfg)
if err != nil {
return fmt.Errorf("error recovering data file: %s", err)
}
if recovered {
if err := os.Remove(filepath.Join(path, "index")); err != nil {
return fmt.Errorf("error deleting the index on recovery: %s", err)
}
}
return nil
}
func recoverDatafile(path string, cfg *config.Config) (recovered bool, err error) {
f, err := os.Open(path)
if err != nil {
return false, fmt.Errorf("opening the datafile: %s", err)
}
defer func() {
closeErr := f.Close()
if err == nil {
err = closeErr
}
}()
dir, file := filepath.Split(path)
rPath := filepath.Join(dir, fmt.Sprintf("%s.recovered", file))
fr, err := os.OpenFile(rPath, os.O_CREATE|os.O_WRONLY, os.ModePerm)
if err != nil {
return false, fmt.Errorf("creating the recovered datafile: %w", err)
}
defer func() {
closeErr := fr.Close()
if err == nil {
err = closeErr
}
}()
dec := codec.NewDecoder(f, cfg.MaxKeySize, cfg.MaxValueSize)
enc := codec.NewEncoder(fr)
e := internal.Entry{}
corrupted := false
for !corrupted {
_, err = dec.Decode(&e)
if err == io.EOF {
break
}
if codec.IsCorruptedData(err) {
corrupted = true
continue
}
if err != nil {
return false, fmt.Errorf("unexpected error while reading datafile: %w", err)
}
if _, err := enc.Encode(e); err != nil {
return false, fmt.Errorf("writing to recovered datafile: %w", err)
}
}
if !corrupted {
if err := os.Remove(fr.Name()); err != nil {
return false, fmt.Errorf("can't remove temporal recovered datafile: %w", err)
}
return false, nil
}
if err := os.Rename(rPath, path); err != nil {
return false, fmt.Errorf("removing corrupted file: %s", err)
}
return true, nil
}

27
v2/internal/entry.go Normal file
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package internal
import (
"hash/crc32"
"time"
)
// Entry represents a key/value in the database
type Entry struct {
Checksum uint32
Key []byte
Offset int64
Value []byte
Expiry *time.Time
}
// NewEntry creates a new `Entry` with the given `key` and `value`
func NewEntry(key, value []byte, expiry *time.Time) Entry {
checksum := crc32.ChecksumIEEE(value)
return Entry{
Checksum: checksum,
Key: key,
Value: value,
Expiry: expiry,
}
}

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package index
import (
"encoding/binary"
"io"
"git.mills.io/prologic/bitcask/v2/internal"
"github.com/pkg/errors"
art "github.com/plar/go-adaptive-radix-tree"
)
var (
errTruncatedKeySize = errors.New("key size is truncated")
errTruncatedKeyData = errors.New("key data is truncated")
errTruncatedData = errors.New("data is truncated")
errKeySizeTooLarge = errors.New("key size too large")
)
const (
int32Size = 4
int64Size = 8
fileIDSize = int32Size
offsetSize = int64Size
sizeSize = int64Size
)
func readKeyBytes(r io.Reader, maxKeySize uint32) ([]byte, error) {
s := make([]byte, int32Size)
_, err := io.ReadFull(r, s)
if err != nil {
if err == io.EOF {
return nil, err
}
return nil, errors.Wrap(errTruncatedKeySize, err.Error())
}
size := binary.BigEndian.Uint32(s)
if maxKeySize > 0 && size > uint32(maxKeySize) {
return nil, errKeySizeTooLarge
}
b := make([]byte, size)
_, err = io.ReadFull(r, b)
if err != nil {
return nil, errors.Wrap(errTruncatedKeyData, err.Error())
}
return b, nil
}
func writeBytes(b []byte, w io.Writer) error {
s := make([]byte, int32Size)
binary.BigEndian.PutUint32(s, uint32(len(b)))
_, err := w.Write(s)
if err != nil {
return err
}
_, err = w.Write(b)
if err != nil {
return err
}
return nil
}
func readItem(r io.Reader) (internal.Item, error) {
buf := make([]byte, (fileIDSize + offsetSize + sizeSize))
_, err := io.ReadFull(r, buf)
if err != nil {
return internal.Item{}, errors.Wrap(errTruncatedData, err.Error())
}
return internal.Item{
FileID: int(binary.BigEndian.Uint32(buf[:fileIDSize])),
Offset: int64(binary.BigEndian.Uint64(buf[fileIDSize:(fileIDSize + offsetSize)])),
Size: int64(binary.BigEndian.Uint64(buf[(fileIDSize + offsetSize):])),
}, nil
}
func writeItem(item internal.Item, w io.Writer) error {
buf := make([]byte, (fileIDSize + offsetSize + sizeSize))
binary.BigEndian.PutUint32(buf[:fileIDSize], uint32(item.FileID))
binary.BigEndian.PutUint64(buf[fileIDSize:(fileIDSize+offsetSize)], uint64(item.Offset))
binary.BigEndian.PutUint64(buf[(fileIDSize+offsetSize):], uint64(item.Size))
_, err := w.Write(buf)
if err != nil {
return err
}
return nil
}
// ReadIndex reads a persisted from a io.Reader into a Tree
func readIndex(r io.Reader, t art.Tree, maxKeySize uint32) error {
for {
key, err := readKeyBytes(r, maxKeySize)
if err != nil {
if err == io.EOF {
break
}
return err
}
item, err := readItem(r)
if err != nil {
return err
}
t.Insert(key, item)
}
return nil
}
func writeIndex(t art.Tree, w io.Writer) (err error) {
t.ForEach(func(node art.Node) bool {
err = writeBytes(node.Key(), w)
if err != nil {
return false
}
item := node.Value().(internal.Item)
err := writeItem(item, w)
return err == nil
})
return
}
// IsIndexCorruption returns a boolean indicating whether the error
// is known to report a corruption data issue
func IsIndexCorruption(err error) bool {
cause := errors.Cause(err)
switch cause {
case errKeySizeTooLarge, errTruncatedData, errTruncatedKeyData, errTruncatedKeySize:
return true
}
return false
}

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package index
import (
"bytes"
"encoding/base64"
"encoding/binary"
"testing"
"git.mills.io/prologic/bitcask/v2/internal"
"github.com/pkg/errors"
art "github.com/plar/go-adaptive-radix-tree"
)
const (
base64SampleTree = "AAAABGFiY2QAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAARhYmNlAAAAAQAAAAAAAAABAAAAAAAAAAEAAAAEYWJjZgAAAAIAAAAAAAAAAgAAAAAAAAACAAAABGFiZ2QAAAADAAAAAAAAAAMAAAAAAAAAAw=="
)
func TestWriteIndex(t *testing.T) {
at, expectedSerializedSize := getSampleTree()
var b bytes.Buffer
err := writeIndex(at, &b)
if err != nil {
t.Fatalf("writing index failed: %v", err)
}
if b.Len() != expectedSerializedSize {
t.Fatalf("incorrect size of serialied index: expected %d, got: %d", expectedSerializedSize, b.Len())
}
sampleTreeBytes, _ := base64.StdEncoding.DecodeString(base64SampleTree)
if !bytes.Equal(b.Bytes(), sampleTreeBytes) {
t.Fatalf("unexpected serialization of the tree")
}
}
func TestReadIndex(t *testing.T) {
sampleTreeBytes, _ := base64.StdEncoding.DecodeString(base64SampleTree)
b := bytes.NewBuffer(sampleTreeBytes)
at := art.New()
err := readIndex(b, at, 1024)
if err != nil {
t.Fatalf("error while deserializing correct sample tree: %v", err)
}
atsample, _ := getSampleTree()
if atsample.Size() != at.Size() {
t.Fatalf("trees aren't the same size, expected %v, got %v", atsample.Size(), at.Size())
}
atsample.ForEach(func(node art.Node) bool {
_, found := at.Search(node.Key())
if !found {
t.Fatalf("expected node wasn't found: %s", node.Key())
}
return true
})
}
func TestReadCorruptedData(t *testing.T) {
sampleBytes, _ := base64.StdEncoding.DecodeString(base64SampleTree)
t.Run("truncated", func(t *testing.T) {
table := []struct {
name string
err error
data []byte
}{
{name: "key-size-first-item", err: errTruncatedKeySize, data: sampleBytes[:2]},
{name: "key-data-second-item", err: errTruncatedKeyData, data: sampleBytes[:6]},
{name: "key-size-second-item", err: errTruncatedKeySize, data: sampleBytes[:(int32Size+4+fileIDSize+offsetSize+sizeSize)+2]},
{name: "key-data-second-item", err: errTruncatedKeyData, data: sampleBytes[:(int32Size+4+fileIDSize+offsetSize+sizeSize)+6]},
{name: "data", err: errTruncatedData, data: sampleBytes[:int32Size+4+(fileIDSize+offsetSize+sizeSize-3)]},
}
for i := range table {
t.Run(table[i].name, func(t *testing.T) {
bf := bytes.NewBuffer(table[i].data)
if err := readIndex(bf, art.New(), 1024); !IsIndexCorruption(err) || errors.Cause(err) != table[i].err {
t.Fatalf("expected %v, got %v", table[i].err, err)
}
})
}
})
t.Run("overflow", func(t *testing.T) {
overflowKeySize := make([]byte, len(sampleBytes))
copy(overflowKeySize, sampleBytes)
binary.BigEndian.PutUint32(overflowKeySize, 1025)
overflowDataSize := make([]byte, len(sampleBytes))
copy(overflowDataSize, sampleBytes)
binary.BigEndian.PutUint32(overflowDataSize[int32Size+4+fileIDSize+offsetSize:], 1025)
table := []struct {
name string
err error
maxKeySize uint32
data []byte
}{
{name: "key-data-overflow", err: errKeySizeTooLarge, maxKeySize: 1024, data: overflowKeySize},
}
for i := range table {
t.Run(table[i].name, func(t *testing.T) {
bf := bytes.NewBuffer(table[i].data)
if err := readIndex(bf, art.New(), table[i].maxKeySize); !IsIndexCorruption(err) || errors.Cause(err) != table[i].err {
t.Fatalf("expected %v, got %v", table[i].err, err)
}
})
}
})
}
func getSampleTree() (art.Tree, int) {
at := art.New()
keys := [][]byte{[]byte("abcd"), []byte("abce"), []byte("abcf"), []byte("abgd")}
expectedSerializedSize := 0
for i := range keys {
at.Insert(keys[i], internal.Item{FileID: i, Offset: int64(i), Size: int64(i)})
expectedSerializedSize += int32Size + len(keys[i]) + fileIDSize + offsetSize + sizeSize
}
return at, expectedSerializedSize
}

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@@ -0,0 +1,59 @@
package index
import (
"os"
"git.mills.io/prologic/bitcask/v2/internal"
art "github.com/plar/go-adaptive-radix-tree"
)
// Indexer is an interface for loading and saving the index (an Adaptive Radix Tree)
type Indexer interface {
Load(path string, maxkeySize uint32) (art.Tree, bool, error)
Save(t art.Tree, path string) error
}
// NewIndexer returns an instance of the default `Indexer` implemtnation
// which perists the index (an Adaptive Radix Tree) as a binary blob on file
func NewIndexer() Indexer {
return &indexer{}
}
type indexer struct{}
func (i *indexer) Load(path string, maxKeySize uint32) (art.Tree, bool, error) {
t := art.New()
if !internal.Exists(path) {
return t, false, nil
}
f, err := os.Open(path)
if err != nil {
return t, true, err
}
defer f.Close()
if err := readIndex(f, t, maxKeySize); err != nil {
return t, true, err
}
return t, true, nil
}
func (i *indexer) Save(t art.Tree, path string) error {
f, err := os.OpenFile(path, os.O_WRONLY|os.O_CREATE|os.O_TRUNC, 0600)
if err != nil {
return err
}
defer f.Close()
if err := writeIndex(t, f); err != nil {
return err
}
if err := f.Sync(); err != nil {
return err
}
return f.Close()
}

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@@ -0,0 +1,71 @@
package index
import (
"encoding/binary"
"io"
"os"
"time"
"git.mills.io/prologic/bitcask/v2/internal"
art "github.com/plar/go-adaptive-radix-tree"
)
type ttlIndexer struct{}
func NewTTLIndexer() Indexer {
return ttlIndexer{}
}
func (i ttlIndexer) Save(t art.Tree, path string) error {
f, err := os.OpenFile(path, os.O_WRONLY|os.O_CREATE|os.O_TRUNC, 0600)
if err != nil {
return err
}
buf := make([]byte, int64Size)
for it := t.Iterator(); it.HasNext(); {
node, err := it.Next()
if err != nil {
return err
}
// save key
err = writeBytes(node.Key(), f)
if err != nil {
return err
}
// save key ttl
binary.BigEndian.PutUint64(buf, uint64(node.Value().(time.Time).Unix()))
_, err = f.Write(buf)
if err != nil {
return err
}
}
return f.Sync()
}
func (i ttlIndexer) Load(path string, maxKeySize uint32) (art.Tree, bool, error) {
t := art.New()
if !internal.Exists(path) {
return t, false, nil
}
f, err := os.Open(path)
if err != nil {
return t, true, err
}
buf := make([]byte, int64Size)
for {
key, err := readKeyBytes(f, maxKeySize)
if err != nil {
if err == io.EOF {
break
}
return t, true, err
}
_, err = io.ReadFull(f, buf)
if err != nil {
return t, true, err
}
expiry := time.Unix(int64(binary.BigEndian.Uint64(buf)), 0).UTC()
t.Insert(key, expiry)
}
return t, true, nil
}

View File

@@ -0,0 +1,54 @@
package index
import (
"io/ioutil"
"os"
"path/filepath"
"testing"
"time"
art "github.com/plar/go-adaptive-radix-tree"
assert2 "github.com/stretchr/testify/assert"
)
func Test_TTLIndexer(t *testing.T) {
assert := assert2.New(t)
tempDir, err := ioutil.TempDir("", "bitcask")
assert.NoError(err)
defer os.RemoveAll(tempDir)
currTime := time.Date(2020, 12, 27, 0, 0, 0, 0, time.UTC)
trie := art.New()
t.Run("LoadEmpty", func(t *testing.T) {
newTrie, found, err := NewTTLIndexer().Load(filepath.Join(tempDir, "ttl_index"), 4)
assert.NoError(err)
assert.False(found)
assert.Equal(trie, newTrie)
})
t.Run("Save", func(t *testing.T) {
trie.Insert([]byte("key"), currTime)
err := NewTTLIndexer().Save(trie, filepath.Join(tempDir, "ttl_index"))
assert.NoError(err)
trie.Insert([]byte("foo"), currTime.Add(24*time.Hour))
err = NewTTLIndexer().Save(trie, filepath.Join(tempDir, "ttl_index"))
assert.NoError(err)
trie.Insert([]byte("key"), currTime.Add(-24*time.Hour))
err = NewTTLIndexer().Save(trie, filepath.Join(tempDir, "ttl_index"))
assert.NoError(err)
})
t.Run("Load", func(t *testing.T) {
newTrie, found, err := NewTTLIndexer().Load(filepath.Join(tempDir, "ttl_index"), 4)
assert.NoError(err)
assert.True(found)
assert.Equal(2, newTrie.Size())
value, found := newTrie.Search([]byte("key"))
assert.True(found)
assert.Equal(currTime.Add(-24*time.Hour), value)
value, found = newTrie.Search([]byte("foo"))
assert.True(found)
assert.Equal(currTime.Add(24*time.Hour), value)
})
}

10
v2/internal/item.go Normal file
View File

@@ -0,0 +1,10 @@
package internal
// Item represents the location of the value on disk. This is used by the
// internal Adaptive Radix Tree to hold an in-memory structure mapping keys to
// locations on disk of where the value(s) can be read from.
type Item struct {
FileID int `json:"fileid"`
Offset int64 `json:"offset"`
Size int64 `json:"size"`
}

View File

@@ -0,0 +1,22 @@
package metadata
import (
"os"
"git.mills.io/prologic/bitcask/v2/internal"
)
type MetaData struct {
IndexUpToDate bool `json:"index_up_to_date"`
ReclaimableSpace int64 `json:"reclaimable_space"`
}
func (m *MetaData) Save(path string, mode os.FileMode) error {
return internal.SaveJsonToFile(m, path, mode)
}
func Load(path string) (*MetaData, error) {
var m MetaData
err := internal.LoadFromJsonFile(path, &m)
return &m, err
}

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@@ -0,0 +1,158 @@
// Code generated by mockery v1.0.0. DO NOT EDIT.
package mocks
import internal "git.mills.io/prologic/bitcask/v2/internal"
import mock "github.com/stretchr/testify/mock"
// Datafile is an autogenerated mock type for the Datafile type
type Datafile struct {
mock.Mock
}
// Close provides a mock function with given fields:
func (_m *Datafile) Close() error {
ret := _m.Called()
var r0 error
if rf, ok := ret.Get(0).(func() error); ok {
r0 = rf()
} else {
r0 = ret.Error(0)
}
return r0
}
// FileID provides a mock function with given fields:
func (_m *Datafile) FileID() int {
ret := _m.Called()
var r0 int
if rf, ok := ret.Get(0).(func() int); ok {
r0 = rf()
} else {
r0 = ret.Get(0).(int)
}
return r0
}
// Name provides a mock function with given fields:
func (_m *Datafile) Name() string {
ret := _m.Called()
var r0 string
if rf, ok := ret.Get(0).(func() string); ok {
r0 = rf()
} else {
r0 = ret.Get(0).(string)
}
return r0
}
// Read provides a mock function with given fields:
func (_m *Datafile) Read() (internal.Entry, int64, error) {
ret := _m.Called()
var r0 internal.Entry
if rf, ok := ret.Get(0).(func() internal.Entry); ok {
r0 = rf()
} else {
r0 = ret.Get(0).(internal.Entry)
}
var r1 int64
if rf, ok := ret.Get(1).(func() int64); ok {
r1 = rf()
} else {
r1 = ret.Get(1).(int64)
}
var r2 error
if rf, ok := ret.Get(2).(func() error); ok {
r2 = rf()
} else {
r2 = ret.Error(2)
}
return r0, r1, r2
}
// ReadAt provides a mock function with given fields: index, size
func (_m *Datafile) ReadAt(index int64, size int64) (internal.Entry, error) {
ret := _m.Called(index, size)
var r0 internal.Entry
if rf, ok := ret.Get(0).(func(int64, int64) internal.Entry); ok {
r0 = rf(index, size)
} else {
r0 = ret.Get(0).(internal.Entry)
}
var r1 error
if rf, ok := ret.Get(1).(func(int64, int64) error); ok {
r1 = rf(index, size)
} else {
r1 = ret.Error(1)
}
return r0, r1
}
// Size provides a mock function with given fields:
func (_m *Datafile) Size() int64 {
ret := _m.Called()
var r0 int64
if rf, ok := ret.Get(0).(func() int64); ok {
r0 = rf()
} else {
r0 = ret.Get(0).(int64)
}
return r0
}
// Sync provides a mock function with given fields:
func (_m *Datafile) Sync() error {
ret := _m.Called()
var r0 error
if rf, ok := ret.Get(0).(func() error); ok {
r0 = rf()
} else {
r0 = ret.Error(0)
}
return r0
}
// Write provides a mock function with given fields: _a0
func (_m *Datafile) Write(_a0 internal.Entry) (int64, int64, error) {
ret := _m.Called(_a0)
var r0 int64
if rf, ok := ret.Get(0).(func(internal.Entry) int64); ok {
r0 = rf(_a0)
} else {
r0 = ret.Get(0).(int64)
}
var r1 int64
if rf, ok := ret.Get(1).(func(internal.Entry) int64); ok {
r1 = rf(_a0)
} else {
r1 = ret.Get(1).(int64)
}
var r2 error
if rf, ok := ret.Get(2).(func(internal.Entry) error); ok {
r2 = rf(_a0)
} else {
r2 = ret.Error(2)
}
return r0, r1, r2
}

View File

@@ -0,0 +1,56 @@
// Code generated by mockery v1.0.0. DO NOT EDIT.
package mocks
import art "github.com/plar/go-adaptive-radix-tree"
import mock "github.com/stretchr/testify/mock"
// Indexer is an autogenerated mock type for the Indexer type
type Indexer struct {
mock.Mock
}
// Load provides a mock function with given fields: path, maxkeySize
func (_m *Indexer) Load(path string, maxkeySize uint32) (art.Tree, bool, error) {
ret := _m.Called(path, maxkeySize)
var r0 art.Tree
if rf, ok := ret.Get(0).(func(string, uint32) art.Tree); ok {
r0 = rf(path, maxkeySize)
} else {
if ret.Get(0) != nil {
r0 = ret.Get(0).(art.Tree)
}
}
var r1 bool
if rf, ok := ret.Get(1).(func(string, uint32) bool); ok {
r1 = rf(path, maxkeySize)
} else {
r1 = ret.Get(1).(bool)
}
var r2 error
if rf, ok := ret.Get(2).(func(string, uint32) error); ok {
r2 = rf(path, maxkeySize)
} else {
r2 = ret.Error(2)
}
return r0, r1, r2
}
// Save provides a mock function with given fields: t, path
func (_m *Indexer) Save(t art.Tree, path string) error {
ret := _m.Called(t, path)
var r0 error
if rf, ok := ret.Get(0).(func(art.Tree, string) error); ok {
r0 = rf(t, path)
} else {
r0 = ret.Error(0)
}
return r0
}

112
v2/internal/utils.go Normal file
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@@ -0,0 +1,112 @@
package internal
import (
"encoding/json"
"fmt"
"io/ioutil"
"os"
"path/filepath"
"sort"
"strconv"
"strings"
)
// Exists returns `true` if the given `path` on the current file system exists
func Exists(path string) bool {
_, err := os.Stat(path)
return err == nil
}
// DirSize returns the space occupied by the given `path` on disk on the current
// file system.
func DirSize(path string) (int64, error) {
var size int64
err := filepath.Walk(path, func(_ string, info os.FileInfo, err error) error {
if err != nil {
return err
}
if !info.IsDir() {
size += info.Size()
}
return err
})
return size, err
}
// GetDatafiles returns a list of all data files stored in the database path
// given by `path`. All datafiles are identified by the the glob `*.data` and
// the basename is represented by a monotonic increasing integer.
// The returned files are *sorted* in increasing order.
func GetDatafiles(path string) ([]string, error) {
fns, err := filepath.Glob(fmt.Sprintf("%s/*.data", path))
if err != nil {
return nil, err
}
sort.Strings(fns)
return fns, nil
}
// ParseIds will parse a list of datafiles as returned by `GetDatafiles` and
// extract the id part and return a slice of ints.
func ParseIds(fns []string) ([]int, error) {
var ids []int
for _, fn := range fns {
fn = filepath.Base(fn)
ext := filepath.Ext(fn)
if ext != ".data" {
continue
}
id, err := strconv.ParseInt(strings.TrimSuffix(fn, ext), 10, 32)
if err != nil {
return nil, err
}
ids = append(ids, int(id))
}
sort.Ints(ids)
return ids, nil
}
// Copy copies source contents to destination
func Copy(src, dst string, exclude []string) error {
return filepath.Walk(src, func(path string, info os.FileInfo, err error) error {
relPath := strings.Replace(path, src, "", 1)
if relPath == "" {
return nil
}
for _, e := range exclude {
matched, err := filepath.Match(e, info.Name())
if err != nil {
return err
}
if matched {
return nil
}
}
if info.IsDir() {
return os.Mkdir(filepath.Join(dst, relPath), info.Mode())
}
var data, err1 = ioutil.ReadFile(filepath.Join(src, relPath))
if err1 != nil {
return err1
}
return ioutil.WriteFile(filepath.Join(dst, relPath), data, info.Mode())
})
}
// SaveJsonToFile converts v into json and store in file identified by path
func SaveJsonToFile(v interface{}, path string, mode os.FileMode) error {
b, err := json.Marshal(v)
if err != nil {
return err
}
return ioutil.WriteFile(path, b, mode)
}
// LoadFromJsonFile reads file located at `path` and put its content in json format in v
func LoadFromJsonFile(path string, v interface{}) error {
b, err := ioutil.ReadFile(path)
if err != nil {
return err
}
return json.Unmarshal(b, v)
}

108
v2/internal/utils_test.go Normal file
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@@ -0,0 +1,108 @@
package internal
import (
"io"
"io/ioutil"
"os"
"path/filepath"
"testing"
"github.com/stretchr/testify/assert"
)
func Test_Copy(t *testing.T) {
assert := assert.New(t)
t.Run("CopyDir", func(t *testing.T) {
tempsrc, err := ioutil.TempDir("", "test")
assert.NoError(err)
defer os.RemoveAll(tempsrc)
var f *os.File
tempdir, err := ioutil.TempDir(tempsrc, "")
assert.NoError(err)
f, err = os.OpenFile(filepath.Join(tempsrc, "file1"), os.O_WRONLY|os.O_CREATE, 0755)
assert.NoError(err)
n, err := f.WriteString("test123")
assert.Equal(7, n)
assert.NoError(err)
f.Close()
f, err = os.OpenFile(filepath.Join(tempsrc, "file2"), os.O_WRONLY|os.O_CREATE, 0755)
assert.NoError(err)
n, err = f.WriteString("test1234")
assert.Equal(8, n)
assert.NoError(err)
f.Close()
f, err = os.OpenFile(filepath.Join(tempsrc, "file3"), os.O_WRONLY|os.O_CREATE, 0755)
assert.NoError(err)
f.Close()
tempdst, err := ioutil.TempDir("", "backup")
assert.NoError(err)
defer os.RemoveAll(tempdst)
err = Copy(tempsrc, tempdst, []string{"file3"})
assert.NoError(err)
buf := make([]byte, 10)
exists := Exists(filepath.Join(tempdst, filepath.Base(tempdir)))
assert.Equal(true, exists)
f, err = os.Open(filepath.Join(tempdst, "file1"))
assert.NoError(err)
n, err = f.Read(buf[:7])
assert.NoError(err)
assert.Equal(7, n)
assert.Equal([]byte("test123"), buf[:7])
_, err = f.Read(buf)
assert.Equal(io.EOF, err)
f.Close()
f, err = os.Open(filepath.Join(tempdst, "file2"))
assert.NoError(err)
n, err = f.Read(buf[:8])
assert.NoError(err)
assert.Equal(8, n)
assert.Equal([]byte("test1234"), buf[:8])
_, err = f.Read(buf)
assert.Equal(io.EOF, err)
f.Close()
exists = Exists(filepath.Join(tempdst, "file3"))
assert.Equal(false, exists)
})
}
func Test_SaveAndLoad(t *testing.T) {
assert := assert.New(t)
t.Run("save and load", func(t *testing.T) {
tempdir, err := ioutil.TempDir("", "bitcask")
assert.NoError(err)
defer os.RemoveAll(tempdir)
type test struct {
Value bool `json:"value"`
}
m := test{Value: true}
err = SaveJsonToFile(&m, filepath.Join(tempdir, "meta.json"), 0755)
assert.NoError(err)
m1 := test{}
err = LoadFromJsonFile(filepath.Join(tempdir, "meta.json"), &m1)
assert.NoError(err)
assert.Equal(m, m1)
})
t.Run("save and load error", func(t *testing.T) {
tempdir, err := ioutil.TempDir("", "bitcask")
assert.NoError(err)
defer os.RemoveAll(tempdir)
type test struct {
Value bool `json:"value"`
}
err = SaveJsonToFile(make(chan int), filepath.Join(tempdir, "meta.json"), 0755)
assert.Error(err)
m1 := test{}
err = LoadFromJsonFile(filepath.Join(tempdir, "meta.json"), &m1)
assert.Error(err)
})
}

18
v2/internal/version.go Normal file
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@@ -0,0 +1,18 @@
package internal
import (
"fmt"
)
var (
// Version release version
Version = "0.0.1"
// Commit will be overwritten automatically by the build system
Commit = "HEAD"
)
// FullVersion returns the full version and commit hash
func FullVersion() string {
return fmt.Sprintf("%s@%s", Version, Commit)
}

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@@ -0,0 +1,15 @@
package internal
import (
"fmt"
"testing"
"github.com/stretchr/testify/assert"
)
func TestFullVersion(t *testing.T) {
assert := assert.New(t)
expected := fmt.Sprintf("%s@%s", Version, Commit)
assert.Equal(expected, FullVersion())
}